TAMU_GH_TBh110P23f542, TAMU_GH_TBh110P23f542 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh110P23f542
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i46435Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr01chromosomeChr01:18663796..18663796 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018221.1chromosomeCM018221.1:19165228..19165328 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:18178212..18178313 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr1chromosomeDt_chr1:51671192..51671292 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:19022549..19022649 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:19628397..19628497 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:18844896..18844996 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:19596401..19596501 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:19151645..19151745 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:19605416..19605516 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:19224933..19225033 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:19570296..19570396 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:19847198..19847298 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D07chromosomeD07:19811187..19811287 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:34725117..34725218 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch16_Dt.07N/A55.91SNPi46435GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch16_Dt.07N/A49.97i46435GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch16_Dt.07N/A49.97i46435GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch16_Dt.07N/A65.5i46435GhView
Sequence
>TAMU_GH_TBh110P23f542 ID=TAMU_GH_TBh110P23f542; Name=TAMU_GH_TBh110P23f542; organism=Gossypium sp.; type=genetic_marker; length=105bp
AACGTTTGAGGGTTTTTAATTTTGTGCCATTGACTTTTTTTATTGATACT
[C/T]TCAACGTTATGATTTTTTCAGAAATCAACTCGATTTTAACGGTAA
ACGTG