TAMU_GH_TBh103K07f272, TAMU_GH_TBh103K07f272 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh103K07f272
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45629Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:1138686..1138786 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:1294172..1294272 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold171.1supercontigscaffold171.1:772465..772565 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:1254641..1254741 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:1328337..1328437 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:1267995..1268095 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:1282171..1282271 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:1260655..1260755 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:1191475..1191575 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:1202070..1202170 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:1168385..1168485 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:1302033..1302133 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:1187274..1187374 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:1326769..1326869 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:131253017..131253117 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:129582938..129583038 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch02_At.02N/A116.58SNPi45629GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch02_At.02N/A102.2i45629GhView
Sequence
>TAMU_GH_TBh103K07f272 ID=TAMU_GH_TBh103K07f272; Name=TAMU_GH_TBh103K07f272; organism=Gossypium sp.; type=genetic_marker; length=105bp
ACTTTTGCTTCGTTTTCTTACTGTCATTTTTAGCAAACTTAGTTCGTTTT
[G/T]TGATTTGTTGCTGCCTTTGTTTCAACAGTGTCGAGGCATAGCTTT
ATTCT