TAMU_GH_TBh102O12r715, TAMU_GH_TBh102O12r715 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh102O12r715
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45546Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr08chromosomeChr08:54042661..54042661 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018226.1chromosomeCM018226.1:56626739..56626839 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:3068963..3069063 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D12chromosomeD12:56636188..56636288 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:59301041..59301141 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:58504111..58504211 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:59350147..59350247 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:57440226..57440326 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:55827629..55827729 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:57605284..57605384 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:57452828..57452928 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:60434052..60434152 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:58035466..58035566 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:59833807..59833907 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:54666799..54666899 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:56607485..56607585 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch26_Dt.12N/A120.28i45546GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch26_Dt.12N/A120.85i45546GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch26_Dt.12N/A122.4i45546GhView
Sequence
>TAMU_GH_TBh102O12r715 ID=TAMU_GH_TBh102O12r715; Name=TAMU_GH_TBh102O12r715; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATTTTAACTCAAAAACTGGTTAGAAAAGTGTTGAGATATTTTCTTGAAA
[A/G]GTTTGTGATTAAAGTCAACCTTTGAGGAAGCAAAAGCTTTATGTA
ACATA