TAMU_GH_TBh100C21f398, TAMU_GH_TBh100C21f398 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh100C21f398
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i45258Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:6749336..6749436 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:105744848..105744948 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:4483786..4483886 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:5740276..5740376 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:7583462..7583562 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:7140524..7140624 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:7533060..7533160 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:6948740..6948840 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:6623472..6623572 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:6886326..6886426 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:7132600..7132700 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:7595037..7595137 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:7049130..7049230 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:7634240..7634340 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:6643674..6643774 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:111459881..111459981 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:7465636..7465736 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:21609594..21609694 +Gossypium gossypioides (D6) genome ISU_v1n/a
F02chromosomeF02:69753407..69753507 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A87.78SNPi45258GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A101.93i45258GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A73i45258GhView
Sequence
>TAMU_GH_TBh100C21f398 ID=TAMU_GH_TBh100C21f398; Name=TAMU_GH_TBh100C21f398; organism=Gossypium sp.; type=genetic_marker; length=105bp
AATAAGGATGTAGAAATCATTACAATGATCTTCAAATGAAGAAGAGAGAA
[C/T]GGTTAATGGAGATAGCAAAAACATGATGGAATTTGGATCAATTCA
TCTAC