TAMU_GH_TBh087I03f84, TAMU_GH_TBh087I03f84 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh087I03f84
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i43823Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:102280392..102280492 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:14676887..14676987 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:8188581..8188681 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:82232264..82232364 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:111334172..111334272 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:109932975..109933075 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:107397876..107397976 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:104216780..104216880 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:100701498..100701598 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:103912604..103912704 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:107739774..107739874 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:114275998..114276098 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:102806289..102806389 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:112125174..112125274 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:116038911..116039011 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:114404766..114404866 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch11_At.11N/A5.73i43823GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch11_At.11N/A5.73i43823GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch11_At.11N/A141.22i43823GhView
Sequence
>TAMU_GH_TBh087I03f84 ID=TAMU_GH_TBh087I03f84; Name=TAMU_GH_TBh087I03f84; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGACATAGTAAATTACCTTGCTACAGGAATAGTTCCTTCTAACTTATCGC
[A/G]ATTTGAAAAAGATAAGATCAAACGTGAGTCACGATATTATATCTG
GGATG