TAMU_GH_TBh085J09r274, TAMU_GH_TBh085J09r274 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh085J09r274
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i43615Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03chromosomeChr03:42067391..42067391 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018217.1chromosomeCM018217.1:49009272..49009372 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:42600336..42600436 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:46975494..46975594 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold154.1supercontigscaffold154.1:1289320..1289420 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:42567213..42567313 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:48540862..48540962 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:49863224..49863324 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:49520058..49520158 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:48793219..48793319 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D03chromosomeGbar_D03:47405684..47405784 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:49793694..49793794 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:48247739..48247839 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:52369846..52369946 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:49876286..49876386 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:50793378..50793478 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:44691169..44691269 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:46311264..46311364 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_03chromosomeChr_03:26879991..26880091 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:48244939..48245039 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:23243533..23243632 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch17_Dt.03N/A31.34i43615GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch17_Dt.03N/A73.42i43615GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch17_Dt.03N/A31.34i43615GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch17_Dt.03N/A87.21i43615GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch17_Dt.03N/A89.1i43615GhView
Sequence
>TAMU_GH_TBh085J09r274 ID=TAMU_GH_TBh085J09r274; Name=TAMU_GH_TBh085J09r274; organism=Gossypium sp.; type=genetic_marker; length=101bp
ARCAGTTCTCCATTTTAAAATATCCACAAGAAATGCTTCAAATTGAATAT
MTGCCTTACTTTTTGACTTAGGGATATCCGTGAAATAATCCGCAGTTTAA
T