TAMU_GH_TBh079D10r235, TAMU_GH_TBh079D10r235 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh079D10r235
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i42959Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:103192108..103192208 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:132787052..132787152 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold1147.1supercontigscaffold1147.1:474772..474872 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:97490288..97490388 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:110139322..110139422 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:108816595..108816695 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:107246600..107246700 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:102521944..102522044 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:102451912..102452012 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:104785818..104785918 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:104151381..104151481 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:111260301..111260401 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:105272333..105272433 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:110819364..110819464 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:2850225..2850325 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:82359346..82359446 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:2919702..2919802 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A25.59SNPi42959GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A25.77i42959GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A24.6i42959GhView
Sequence
>TAMU_GH_TBh079D10r235 ID=TAMU_GH_TBh079D10r235; Name=TAMU_GH_TBh079D10r235; organism=Gossypium sp.; type=genetic_marker; length=105bp
TCCTTGGCTAGCACAATTGCATCGTATCACACGGATTACTAAAATCTAAC
[A/C]TTTAAAGCTTTGATTTTTAAGATTTAAATTTTGATTTTAAATACA
TTTTT