TAMU_GH_TBh079A12r158, TAMU_GH_TBh079A12r158 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh079A12r158
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i42939Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:98429749..98429849 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:127803066..127803166 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:48673340..48673440 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:93118270..93118370 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:105073541..105073641 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:104011923..104012023 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:102150847..102150947 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:97399607..97399707 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:97598498..97598598 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:100006420..100006520 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:99226969..99227069 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:106403127..106403227 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:100337821..100337921 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:105724247..105724347 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:7965523..7965623 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:7874910..7875010 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch03_At.03N/A93.88i42939GhView
20-153 x sGK9708, RIL (2017)AD_ch03_At.03N/A28.06i42939GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch03_At.03N/A93.88i42939GhView
4DS-28 x SBYF-425, RIL (2022)AD_ch03_At.03N/A85.24i42939GhView
Sequence
>TAMU_GH_TBh079A12r158 ID=TAMU_GH_TBh079A12r158; Name=TAMU_GH_TBh079A12r158; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATTAGGGAGCATGCAACATTGCATGTAATAATTCGAAACAAAAACCAATA
[C/T]CGAATGGATGGGAATCAACTGTTGGCTTTCTAAGCATTAAGTTTA
TTCCG