TAMU_GH_TBh078E06f67, TAMU_GH_TBh078E06f67 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh078E06f67
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i42868Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:44329012..44329112 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00025023_CRI-A2_v1.0.a1chromosometig00025023_CRI-A2_v1.0.a1:26225..26325 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
tig00022794_CRI-A2_v1.0.a1chromosometig00022794_CRI-A2_v1.0.a1:11184..11284 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:8519472..8519572 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:30425633..30425733 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:46215145..46215245 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:48776765..48776865 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:46400378..46400478 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:42778916..42779016 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:44509106..44509206 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:45177186..45177286 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:46361865..46361965 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:51105054..51105154 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:44614267..44614367 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:49160883..49160983 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:68496928..68497028 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:69642141..69642241 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch04_At.04N/A62.14i42868GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch04_At.04N/A51.05i42868GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch04_At.04N/A39.1i42868GhView
Sequence
>TAMU_GH_TBh078E06f67 ID=TAMU_GH_TBh078E06f67; Name=TAMU_GH_TBh078E06f67; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTTGCAAGCCAAGAGAACTCAGTGTGAATTGGGAATTGAATCAGACTTTC
[A/G]GATTGGTACCGATGGATGCCTAATGTTCAAAGATAGAGTTTGTGT
ACCCA