TAMU_GH_TBh075B04f253, TAMU_GH_TBh075B04f253 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh075B04f253
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i42539Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:31384556..31384656 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:53398215..53398315 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:10005944..10006044 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold828_A04supercontigscaffold828_A04:171138..171238 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:33211927..33212027 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:33395398..33395498 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:32522636..32522736 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:30883561..30883661 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:30951736..30951836 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:31269905..31270005 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:32722733..32722833 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:37289594..37289694 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:31229508..31229608 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:34532024..34532124 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:58165974..58166074 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch04_At.04N/A13.11i42539GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch04_At.04N/A62.5i42539GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch04_At.04N/A39.1i42539GhView
Sequence
>TAMU_GH_TBh075B04f253 ID=TAMU_GH_TBh075B04f253; Name=TAMU_GH_TBh075B04f253; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGTTTCTTGATAGATTATAAATGCTTGTTGATAGATATACGAGTTTTGTT
[C/T]GGTGATTTTTAATGAAAATGCAAATTAGCGTCTAAATTGTGAAAT
GTGTA