TAMU_GH_TBh066C23f629, TAMU_GH_TBh066C23f629 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh066C23f629
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i41753Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:53200789..53200789 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018222.1chromosomeCM018222.1:56316857..56316957 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:52646035..52646135 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold544.1supercontigscaffold544.1:847992..848092 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:56404252..56404352 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:59054036..59054136 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:59763165..59763265 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:58933257..58933357 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:56205700..56205800 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:56353259..56353359 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:58278459..58278559 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:57819561..57819661 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:60014538..60014638 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:56732892..56732992 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:59622227..59622327 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:53531199..53531299 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:54949233..54949333 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch24_Dt.08N/A19.18i41753GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch24_Dt.08N/A19.18i41753GhView
3DS-28 x SBYF-425, RIL (2022)AD_ch21_Dt.11N/A64.62i41753GhView
Sequence
>TAMU_GH_TBh066C23f629 ID=TAMU_GH_TBh066C23f629; Name=TAMU_GH_TBh066C23f629; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATACACTTAAATTTAACGACATTTATTCACTTATGAACTTACCTCGTAC
[A/G]GACACAAACAAACTGGACGACTATTCGAAAATTTTCAATTTTTCC
CCGAT