TAMU_GH_TBh064G21r468, TAMU_GH_TBh064G21r468 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh064G21r468
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i41613Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:53098355..53098355 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018225.1chromosomeCM018225.1:61198536..61198636 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:7637514..7637614 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_11chromosomeD5_11:7699624..7699724 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:61061191..61061291 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold326.1supercontigscaffold326.1:753022..753122 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4505_D11supercontigscaffold4505_D11:18121..18221 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4505_D11supercontigscaffold4505_D11:74406..74506 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:63940598..63940698 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:63883022..63883122 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold44655_objsupercontigscaffold44655_obj:485..585 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:63073919..63074019 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:63802057..63802157 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:61172731..61172831 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D11chromosomeD11:61115124..61115224 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:60674063..60674163 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:63637327..63637427 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:63319402..63319500 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:64730749..64730849 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D11chromosomeD11:63735278..63735378 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D11chromosomeD11:63677672..63677772 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:5945351..5945451 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:6007419..6007519 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch21_Dt.11N/A65.22i41613GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch21_Dt.11N/A65.22i41613GhView
3DS-28 x SBYF-425, RIL (2022)AD_ch24_Dt.08N/A23.49i41613GhView
Sequence
>TAMU_GH_TBh064G21r468 ID=TAMU_GH_TBh064G21r468; Name=TAMU_GH_TBh064G21r468; organism=Gossypium sp.; type=genetic_marker; length=105bp
AAGGTTACCTTTGGATATTAGGAGTGTATTTTGAGCCACAATACTCTTTT
[G/T]CTAGGGAGATATTAGCAAAAACATTCGTCATGGCATCAATAATGG
ATGAC