TAMU_GH_TBh061N08f612, TAMU_GH_TBh061N08f612 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh061N08f612
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i41432Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07chromosomeChr07:46360528..46360528 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018225.1chromosomeCM018225.1:54104652..54104751 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:14444667..14444766 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_11chromosomeD10_11:53030030..53030129 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold269.1supercontigscaffold269.1:680900..680999 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:51745314..51745413 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:56646626..56646725 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:56060714..56060813 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:56595284..56595383 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:53872998..53873097 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:53831516..53831615 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:56717856..56717955 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:56014178..56014277 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:57383758..57383857 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:53718925..53719024 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:56445200..56445299 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:12746265..12746364 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:53768585..53768684 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:38427919..38428018 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:35779805..35779904 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:54287809..54287908 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch21_Dt.11N/A53.47i41432GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch21_Dt.11N/A53.47i41432GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch21_Dt.11N/A100.3i41432GhView
Sequence
>TAMU_GH_TBh061N08f612 ID=TAMU_GH_TBh061N08f612; Name=TAMU_GH_TBh061N08f612; organism=Gossypium sp.; type=genetic_marker; length=105bp
ACATGGTCGTGTGTCATGCACGGATGGTTGACACGACCGTATGTGTTACA
[C/T]GTTCAGGGTAATTTTAGATCCACATGACATCAATTAGTTTGCACG
ATCTA