TAMU_GH_TBh058C05r480, TAMU_GH_TBh058C05r480 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh058C05r480
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i41064Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:13372570..13372570 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:13796639..13796739 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:50040998..50041098 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:41382829..41382929 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:14675239..14675339 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:14422951..14423051 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:13911417..13911517 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:14328159..14328259 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:14396077..14396177 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:14281867..14281967 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:13737213..13737313 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:14314024..14314124 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017702.1chromosomeCM017702.1:14094110..14094210 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:14756043..14756143 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:12896330..12896430 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr05chromosomechr05:11072724..11072824 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch14_Dt.02N/A63.1SNPi41064GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A37.79i41064GhView
30-153 x sGK9708, RIL (2017)AD_ch14_Dt.02N/A129.4i41064GhView
4HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A37.79i41064GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch14_Dt.02N/A57.6i41064GhView
Sequence
>TAMU_GH_TBh058C05r480 ID=TAMU_GH_TBh058C05r480; Name=TAMU_GH_TBh058C05r480; organism=Gossypium sp.; type=genetic_marker; length=105bp
GGTAGCTGAAATACATTGCACGCACTGCTGGTGTTGAGAGCTAGATAGGC
[A/G]GAAGCTATCATCTCAAATTTTCTCCTTTAATTCTTATCGCATTTT
CTTTA