TAMU_GH_TBh055D17r646, TAMU_GH_TBh055D17r646 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh055D17r646
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i40792Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:67327351..67327451 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:85806306..85806406 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3491.1supercontigscaffold3491.1:48353..48453 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:59712253..59712353 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:71199791..71199891 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:72725449..72725549 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:70970046..70970146 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:66615468..66615568 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:67677578..67677678 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:69194878..69194978 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:68451226..68451326 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:74336477..74336577 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:70216066..70216166 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:74034299..74034399 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:36723653..36723753 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:42199250..42199350 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch10_At.10N/A36.82i40792GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch10_At.10N/A36.82i40792GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch10_At.10N/A76.53i40792GhView
Sequence
>TAMU_GH_TBh055D17r646 ID=TAMU_GH_TBh055D17r646; Name=TAMU_GH_TBh055D17r646; organism=Gossypium sp.; type=genetic_marker; length=105bp
CATATATCATTTGGATCATTTAACCTTTCCATGAAGTTGAATTTTTAATT
[A/C]TTTTAACTCCTTTGGTGCCATATGATAAGGCGCTATTGAAACTAG
TGCAG