TAMU_GH_TBh050H06r474, TAMU_GH_TBh050H06r474 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh050H06r474
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i40336Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:90640724..90640824 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:9378184..9378285 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2376.1supercontigscaffold2376.1:223737..223837 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:79210893..79210993 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:98412043..98412143 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:98794055..98794155 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:96569342..96569442 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:93469040..93469140 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:93350544..93350644 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:92657779..92657879 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:93890715..93890815 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:97395043..97395144 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:92977663..92977763 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:100096800..100096900 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:100783785..100783886 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:107949980..107950082 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch09_At.09N/A10.93i40336GhView
20-153 x sGK9708, RIL (2017)AD_ch12_At.12N/A71.46i40336GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch09_At.09N/A10.93i40336GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch12_At.12N/A108.32i40336GhView
Sequence
>TAMU_GH_TBh050H06r474 ID=TAMU_GH_TBh050H06r474; Name=TAMU_GH_TBh050H06r474; organism=Gossypium sp.; type=genetic_marker; length=105bp
AAAGAATGTGATGTAGCCTTGGGAAAAATATAGACATTACATCCAATTTA
[A/C]TGAAAAAAAATCGTGCAAACACGTGGGTTCATCGTCAATTACAAT
TACGG