TAMU_GH_TBh046O24r277, TAMU_GH_TBh046O24r277 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh046O24r277
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i39982Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:96695443..96695543 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:125802455..125802555 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:47009408..47009508 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:91414029..91414129 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:103293924..103294024 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:102301651..102301751 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:100370363..100370463 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:95617532..95617632 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:95866886..95866986 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:98145617..98145717 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:97459797..97459897 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:104423425..104423525 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:98467531..98467631 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:103913618..103913718 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:9893728..9893828 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:9870254..9870354 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A59.43SNPi39982GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A54.5i39982GhView
3DS-28 x SBYF-425, RIL (2022)AD_ch03_At.03N/A72.68i39982GhView
Sequence
>TAMU_GH_TBh046O24r277 ID=TAMU_GH_TBh046O24r277; Name=TAMU_GH_TBh046O24r277; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATTCACCGTGGGGTGCACCAGTTTTATTTGTAAAAAAGAAAGATGTTCGA
[G/T]AAGGCTAAGTATTGATTACCGACAATTCAACAAGGTAATGATAAA
GAATA