TAMU_GH_TBh046F20f686, TAMU_GH_TBh046F20f686 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh046F20f686
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i39918Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr12chromosomeChr12:1414861..1414861 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018218.1chromosomeCM018218.1:1316125..1316215 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
scaffold586.1supercontigscaffold586.1:493087..493177 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:1351692..1351782 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:1396126..1396216 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:1527771..1527861 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:1266932..1267022 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:1278152..1278242 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:1289975..1290065 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:1380117..1380207 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:1477964..1478054 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:1493087..1493177 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:1420655..1420745 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:1690688..1690778 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:1449906..1449996 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:1456085..1456175 +Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch22_Dt.04N/A10.8i39918GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch22_Dt.04N/A10.8i39918GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch22_Dt.04N/A5.55i39918GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch22_Dt.04N/A2.7i39918GhView
Sequence
>TAMU_GH_TBh046F20f686 ID=TAMU_GH_TBh046F20f686; Name=TAMU_GH_TBh046F20f686; organism=Gossypium sp.; type=genetic_marker; length=95bp
TTGCCCCCATCTCAGTTTCTTGGTGTCGCCTTCACCATGGATCCTCGATG
[A/G]ATGAAATTGTTGGAGCCTAAAACTCGTCGCACCAAATCTC