TAMU_GH_TBh044D23r388, TAMU_GH_TBh044D23r388 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh044D23r388
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i39672Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:20239696..20239696 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:20906835..20906935 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:43085548..43085648 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:40470407..40470507 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:22354993..22355093 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:21859510..21859610 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:21350222..21350322 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:21805322..21805422 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:21832253..21832353 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:21365063..21365163 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:20814063..20814163 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:21532910..21533010 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:22660341..22660441 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D02chromosomeD02:22275484..22275584 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:19827719..19827819 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr05chromosomechr05:16780115..16780215 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:14876112..14876212 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:16345927..16346027 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch14_Dt.02N/A62.34SNPi39672GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A32.74i39672GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A32.74i39672GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch14_Dt.02N/A57.1i39672GhView
Sequence
>TAMU_GH_TBh044D23r388 ID=TAMU_GH_TBh044D23r388; Name=TAMU_GH_TBh044D23r388; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTCGGTGCAAACCATTGAGATTTTGTTGAGTGTTGGATATGCATGTTGTG
[C/T]GTTTTTAATGAGCCAAATGCATGAATTTAAAATGTGCATGTAGTT
ATAGG