TAMU_GH_TBh040E18r336, TAMU_GH_TBh040E18r336 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh040E18r336
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i39228Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeChr11:2681307..2681307 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018224.1chromosomeCM018224.1:2818468..2818568 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:59732434..59732533 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_10chromosomeD10_10:61322196..61322295 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold3641.1supercontigscaffold3641.1:45809..45909 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold30284supercontigscaffold30284:325..425 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:2707334..2707434 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:3207146..3207246 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:2891399..2891499 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:2995630..2995730 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:3052646..3052746 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:2848231..2848331 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:2896398..2896498 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:2882482..2882582 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:2956152..2956251 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:2901132..2901232 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:2997194..2997294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:2655266..2655365 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:2643534..2643633 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:2714349..2714448 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:2204616..2204715 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:2882668..2882767 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch20_Dt.10N/A9.85i39228GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch20_Dt.10N/A9.85i39228GhView
Sequence
>TAMU_GH_TBh040E18r336 ID=TAMU_GH_TBh040E18r336; Name=TAMU_GH_TBh040E18r336; organism=Gossypium sp.; type=genetic_marker; length=105bp
CCACTTTAATGGATTCCCATAAATCTCCTTGAATTTAAGTAAATATTTGC
[A/G]AAAAGCATGATGGAGGTCTTTATTTAAGAGTTTGGATTGTATTTT
ATTTA