TAMU_GH_TBh036K19f576, TAMU_GH_TBh036K19f576 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh036K19f576
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i38809Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:52976824..52976824 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:55844029..55844128 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:11299740..11299840 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr5chromosomeDt_chr5:21912559..21912659 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:56582059..56582159 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:58408781..58408881 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:58843926..58844026 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:59837284..59837384 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:56842190..56842290 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:56387651..56387750 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:57705987..57706086 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:58717928..58718028 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:60194579..60194679 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D02chromosomeD02:60780244..60780344 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:51946883..51946983 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:54713369..54713469 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:40924400..40924500 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:56345363..56345463 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:36064267..36064367 -Gossypium aridum (D4) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A44.39i38809GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A44.39i38809GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch14_Dt.02N/A56.25i38809GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch14_Dt.02N/A48.3i38809GhView
Sequence
>TAMU_GH_TBh036K19f576 ID=TAMU_GH_TBh036K19f576; Name=TAMU_GH_TBh036K19f576; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATCTCCTAATAATTTCTTTTAAGGATTCGTCTTCTTATCCAGTCGATCCA
[C/T]TGATACTCCTACCATTTTGCATAATTCCATTATTAGATATGGGAA
GAATG