TAMU_GH_TBh025N17r421, TAMU_GH_TBh025N17r421 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh025N17r421
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i37554Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeChr11:23077127..23077127 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018224.1chromosomeCM018224.1:23544453..23544553 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:39082593..39082693 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr11chromosomeDt_chr11:22490063..22490163 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:23624688..23624788 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:23688440..23688538 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:23017416..23017516 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:23849309..23849409 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:23823744..23823844 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:23370019..23370119 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:23738843..23738943 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:23380593..23380693 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:23882340..23882440 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:24006586..24006686 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:24013844..24013944 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:23096777..23096877 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch20_Dt.10N/A39.76i37554GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch20_Dt.10N/A68.12i37554GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch20_Dt.10N/A39.76i37554GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch20_Dt.10N/A80.4i37554GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch20_Dt.10N/A53.6i37554GhView
Sequence
>TAMU_GH_TBh025N17r421 ID=TAMU_GH_TBh025N17r421; Name=TAMU_GH_TBh025N17r421; organism=Gossypium sp.; type=genetic_marker; length=105bp
AACTACAAAAATGGGGTTCCAAAACATCCATTTTTAACACTATTAAAAAT
[C/T]GAGCTGTTACACAATTTGAGAGACAATCGGCTGGAATTGCTAGTA
TTCTT