TAMU_GH_TBh015B18r141, TAMU_GH_TBh015B18r141 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBh015B18r141
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i36372Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018207.1chromosomeCM018207.1:1326191..1326291 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:1281597..1281697 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold5383.1supercontigscaffold5383.1:21794..21894 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:1168276..1168376 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:1371511..1371611 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:1265562..1265662 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:1281942..1282042 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:1334436..1334536 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:1207403..1207503 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:1276238..1276338 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:1307752..1307852 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:1334648..1334748 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:1294696..1294796 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:1372181..1372281 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:1323965..1324065 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:1320808..1320908 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch09_At.09N/A46.24i36372GhView
20-153 x sGK9708, RIL (2017)AD_ch06_At.06N/A2.84i36372GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch09_At.09N/A46.24i36372GhView
4DS-28 x SBYF-425, RIL (2022)AD_ch06_At.06N/A82.34i36372GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch06_At.06N/A107.1i36372GhView
Sequence
>TAMU_GH_TBh015B18r141 ID=TAMU_GH_TBh015B18r141; Name=TAMU_GH_TBh015B18r141; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTAATAAGAATCATATTTAAAGTAACATTTTCTACAATTGAAAATTAATA
[G/T]TCGACGTTAAAAGTAATATTCACCACTATATTTCTCACCGCCAAA
ATTGA