TAMU_GH_TBb119P16r189, TAMU_GH_TBb119P16r189 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb119P16r189
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i35017Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:24070928..24071028 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:95470926..95471026 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:95154885..95154985 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:24818704..24818804 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:114449302..114449402 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:103728..103828 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:51063781..51063881 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:37906336..37906436 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:63037953..63038053 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3404_A12supercontigscaffold3404_A12:314759..314859 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:22068007..22068107 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:84220507..84220607 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:24648804..24648904 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:103280415..103280515 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:101439042..101439142 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:23936629..23936729 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:103439581..103439681 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:102804143..102804243 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:24694669..24694769 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:101437591..101437691 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:101419353..101419453 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:98353643..98353743 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:99434601..99434701 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:23800664..23800764 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2535supercontigScaffold2535:28994..29094 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:95175923..95176023 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold18957_obj_A05supercontigscaffold18957_obj_A05:1774..1874 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:97540031..97540131 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:100215270..100215370 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:24287207..24287307 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:97135573..97135673 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:9950966..9951066 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:102473503..102473603 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:105604748..105604848 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:23994655..23994755 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:97896731..97896831 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:98059279..98059379 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:25082750..25082850 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:104999331..104999431 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:103011809..103011909 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:9831289..9831389 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:24718865..24718965 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:99771340..99771440 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A61.27i35017GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch05_At.05N/A61.27i35017GhView
Sequence
>TAMU_GH_TBb119P16r189 ID=TAMU_GH_TBb119P16r189; Name=TAMU_GH_TBb119P16r189; organism=Gossypium sp.; type=genetic_marker; length=105bp
AAAAGCCCCATAGAGGGAAATGTATGCGCATCCGAGGGAGAATCAAAGGC
[A/G]CAGAATCAAACACCTAATTATCCCGTGGTGATTATTTTGAGACCC
AAAAA