TAMU_GH_TBb119O10r151, TAMU_GH_TBb119O10r151 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb119O10r151
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i35007Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018205.1chromosomeCM018205.1:80021652..80021752 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:312159..312259 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:126839616..126839716 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold804.1supercontigscaffold804.1:399458..399558 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:62124638..62124738 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:84086127..84086227 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:86758208..86758308 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:83660121..83660221 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:80050959..80051059 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:80506397..80506497 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:80930162..80930262 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:82500046..82500146 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:91082780..91082880 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:81052109..81052209 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:88156900..88157000 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:108165625..108165725 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:110047228..110047328 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_02chromosomeB_02:1299199..1299299 +Gossypium anomalum (B1) genome NSF_v1n/a
E04chromosomeE04:104880843..104880943 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr04chromosomeChr04:176641943..176642043 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch09_At.09N/AN/A30.2i35007GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch04_At.04N/AN/A118.29i35007GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch09_At.09N/AN/A30.2i35007GhView
4Suvin x BCS23-18-7, F2 (2019)AD_ch04_At.04N/AAD_chr.041.86i35007GhView
53-79 x TM-1, F2 (2015 SNP)AD_ch04_At.04N/AN/A101.07i35007GhView
6Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch04_At.04N/AN/A80.4i35007GhView
Sequence
>TAMU_GH_TBb119O10r151 ID=TAMU_GH_TBb119O10r151; Name=TAMU_GH_TBb119O10r151; organism=Gossypium sp.; type=genetic_marker; length=105bp
TCGTAACGTTGAACGTGATCATCTCGCCTTTCATGAAGCTTTCTATGCTC
[C/T]CCCTCATAAATTCTAAGTGTCGCCCTAACCCATCTCGGAGTTGTT
TTATG