TAMU_GH_TBb119I02f576, TAMU_GH_TBb119I02f576 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb119I02f576
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i34963Gh
TypeSNP
SNP AllelesA/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:20349850..20349850 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:21170700..21170800 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_03chromosomeD10_03:44464116..44464216 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:62169401..62169501 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:22574876..22574976 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:22071958..22072058 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:22082101..22082201 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:21978574..21978674 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:22001873..22001973 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:21595865..21595965 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:21649725..21649825 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:21770345..21770445 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:22832028..22832128 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:21381037..21381137 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:22444717..22444817 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
chr05chromosomechr05:16894178..16894278 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:14770416..14770516 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:21737308..21737408 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:12518837..12518936 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A49.44i34963GhView
20-153 x sGK9708, RIL (2017)AD_ch14_Dt.02N/A50.96i34963GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A49.44i34963GhView
Sequence
>TAMU_GH_TBb119I02f576 ID=TAMU_GH_TBb119I02f576; Name=TAMU_GH_TBb119I02f576; organism=Gossypium sp.; type=genetic_marker; length=105bp
TATTAATTTTAAATAAAAGATTTCATAAGTTTTCCATGTATCTTACCACA
[A/C]AAAATACGCAAAAGTTGTTTGAGATGTTTAGTTCCATCTCAATCT
ACTAA