TAMU_GH_TBb114D21r379, TAMU_GH_TBb114D21r379 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb114D21r379
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i34413Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:46891874..46891874 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018216.1chromosomeCM018216.1:49883525..49883625 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr5chromosomeDt_chr5:34485663..34485763 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr5chromosomeAt_chr5:26299554..26299654 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:50478096..50478196 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:52280212..52280312 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:52911141..52911241 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:53657887..53657987 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:50702213..50702313 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:50462149..50462249 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:51808856..51808956 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017702.1chromosomeCM017702.1:51291698..51291798 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:54653974..54654074 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:48701204..48701304 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr05chromosomeChr05:32111371..32111471 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:33506791..33506891 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch14_Dt.02N/A30.52i34413GhView
20-153 x sGK9708, RIL (2017)AD_ch14_Dt.02N/A38.51i34413GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch14_Dt.02N/A30.52i34413GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch14_Dt.02N/A64.78i34413GhView
Sequence
>TAMU_GH_TBb114D21r379 ID=TAMU_GH_TBb114D21r379; Name=TAMU_GH_TBb114D21r379; organism=Gossypium sp.; type=genetic_marker; length=105bp
TCATGAGCTAATCTGATTAAAATATCCCTAGAGTAATCAAAGTTTAAGTG
[A/G]GAAAAAATATTAGAGTATAACTAGGAGAAGAAACGCAATTTATGT
GGGAA