TAMU_GH_TBb113B08f603, TAMU_GH_TBb113B08f603 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb113B08f603
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i34270Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:23939805..23939905 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:24635941..24636041 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold5201.1supercontigscaffold5201.1:20063..20163 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:21909209..21909309 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:24506726..24506826 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:23787072..23787172 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:24552522..24552622 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:24709462..24709562 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:23654519..23654619 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:24326580..24326680 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:24157043..24157143 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:24511270..24511370 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:23864052..23864152 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:24940403..24940503 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:24557983..24558083 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_05chromosomeB_05:61988636..61988736 -Gossypium anomalum (B1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A47.15i34270GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch05_At.05N/A47.15i34270GhView
3DS-28 x SBYF-425, RIL (2022)AD_ch05_At.05N/A20.65i34270GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A119.29i34270GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A101.1i34270GhView
Sequence
>TAMU_GH_TBb113B08f603 ID=TAMU_GH_TBb113B08f603; Name=TAMU_GH_TBb113B08f603; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGCCTATATATGTATTGAGCTTGCTAGAACAACTAAACCAGGCGTGTGTA
[C/T]CAATTGTAAGCACTTGAAATGAAACTAAATATTTATTTGTTTGTA
ATCCA