TAMU_GH_TBb103P17r584, TAMU_GH_TBb103P17r584 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb103P17r584
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i33374Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:4177144..4177244 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:4279051..4279151 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:108706078..108706178 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:3039386..3039486 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold511_A03supercontigscaffold511_A03:3320..3420 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:5040214..5040314 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:4651637..4651737 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:4970246..4970346 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:4387282..4387382 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:4308296..4308396 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:4396357..4396457 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:4616170..4616270 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:4961590..4961690 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:4576201..4576301 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:5051566..5051666 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:4059635..4059735 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:114117773..114117873 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A106.16SNPi33374GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A88.6i33374GhView
Sequence
>TAMU_GH_TBb103P17r584 ID=TAMU_GH_TBb103P17r584; Name=TAMU_GH_TBb103P17r584; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTTTGTTTGTCACTGTGGAATTAAACAGCAAAGAAGATTGCCTAAAATTT
[C/T]TCACTTGTGTTTATACCAAGTAAACTTGTTCTCTTCCTAAATAAA
TTCTG