USDA_SNP0290, USDA_SNP0290 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0290
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00065Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:65721908..65721970 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:72847527..72847589 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:9242458..9242520 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr6chromosomeAt_chr6:53610014..53610076 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:7063793..7063855 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2306_A09supercontigscaffold2306_A09:97244..97306 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:69979561..69979623 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:71692402..71692464 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:71733949..71734011 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:68356024..68356086 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A09chromosomeGbar_A09:66206719..66206781 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:67666302..67666364 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:67596051..67596113 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:42982379..42982441 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:70479539..70479601 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:67627906..67627968 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:73098359..73098421 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:72153518..72153580 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:75113650..75113712 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_09chromosomeB_09:59962932..59962994 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:41091680..41091742 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:33846049..33846111 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:28272885..28272947 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:42427685..42427747 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06_5575772chromosomeChr06_5575772:3666..3727 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:23430343..23430405 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:118377202..118377264 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0290 ID=USDA_SNP0290; Name=USDA_SNP0290; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCAGAGCCGAAAATATCACGTCCACAAACCACCAATTTCCCACTTC
CTGC[A/G]AACTCGTC