TAMU_GH_TBb102I20r71, TAMU_GH_TBb102I20r71 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb102I20r71
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i33219Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:15929546..15929646 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:15690446..15690546 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:95977846..95977946 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr5chromosomeAt_chr5:8044016..8044116 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:14531787..14531887 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:16802829..16802929 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:16632330..16632430 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:15903849..15903949 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:15653429..15653529 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:15636477..15636577 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:16076319..16076419 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:16393949..16394049 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:15842168..15842268 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:16959391..16959491 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:15893900..15894000 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:101855338..101855438 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A76.73SNPi33219GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch02_At.02N/A41.56i33219GhView
30-153 x sGK9708, RIL (2017)AD_ch03_At.03N/A61.11i33219GhView
4DS-28 x SBYF-425, RIL (2022)AD_ch03_At.03N/A63.25i33219GhView
53-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A85.22i33219GhView
6Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A64.8i33219GhView
Sequence
>TAMU_GH_TBb102I20r71 ID=TAMU_GH_TBb102I20r71; Name=TAMU_GH_TBb102I20r71; organism=Gossypium sp.; type=genetic_marker; length=105bp
GTTTTGTACTACCAAATATTGGAGTAATATTGGTTTATATTTTCTTTTGT
[A/G]TTCACATCAGGGAATGCAATAGTTTTACTAGGATGAACTTAAAAA
CGTCC