TAMU_GH_TBb098B18f203, TAMU_GH_TBb098B18f203 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb098B18f203
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i32745Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:997253..997353 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:1262398..1262498 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:112778317..112778417 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold854.1supercontigscaffold854.1:660569..660669 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:1060048..1060148 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:1851338..1851438 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:1285050..1285150 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:1438227..1438327 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:1153984..1154084 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:1291007..1291107 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:1262157..1262257 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:1366182..1366282 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:1360652..1360752 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:1489386..1489486 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:1211253..1211353 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:117545846..117545946 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A139.66SNPi32745GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A134.44i32745GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A117.1i32745GhView
Sequence
>TAMU_GH_TBb098B18f203 ID=TAMU_GH_TBb098B18f203; Name=TAMU_GH_TBb098B18f203; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGAAGTTAACAATGGGGAATTTTAACACATTTGGGGACATTAATGAATCA
[G/T]TAGATCCTATTTCCATACACATACACACACATATATATATGTTTG
CACAC