TAMU_GH_TBb097F21r217, TAMU_GH_TBb097F21r217 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb097F21r217
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i32650Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:97149630..97149730 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:101243482..101243582 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:116351768..116351868 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:23327715..23327815 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:73620130..73620230 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:100999579..100999679 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:103276334..103276434 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:101463740..101463840 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:99939970..99940070 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:102195474..102195574 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:105570332..105570432 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:103163520..103163620 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:108074279..108074379 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:103284343..103284443 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:104187053..104187153 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:110103521..110103621 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:114705952..114706052 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch13_At.13N/A23.4i32650GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch13_At.13N/A23.4i32650GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch13_At.13N/A76.5i32650GhView
Sequence
>TAMU_GH_TBb097F21r217 ID=TAMU_GH_TBb097F21r217; Name=TAMU_GH_TBb097F21r217; organism=Gossypium sp.; type=genetic_marker; length=105bp
TACTATCAATATGCAATCACAAAATATTTTTCCTCATTTGAATAGATTTA
[A/G]TGCACTTTATTCTCTTCATACAAAAACCTATCCAAGTCTCTCCCT
TAAGT