TAMU_GH_TBb096M14r81, TAMU_GH_TBb096M14r81 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb096M14r81
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i32576Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:11084856..11084956 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:10188828..10188928 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11690141..11690241 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:10585714..10585814 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold26020supercontigscaffold26020:1239..1339 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:9927875..9927975 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:9876295..9876395 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:10503037..10503137 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:10323919..10324019 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:10273675..10273775 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9883495..9883595 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:11316561..11316661 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:10581478..10581578 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:10466592..10466692 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:10514899..10514999 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10583669..10583768 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:11531191..11531291 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_01chromosomeB_01:10877858..10877958 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:8700879..8700979 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:9005407..9005507 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch01_At.01N/A81.3SNPi32576GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A104.5i32576GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A77.5i32576GhView
Sequence
>TAMU_GH_TBb096M14r81 ID=TAMU_GH_TBb096M14r81; Name=TAMU_GH_TBb096M14r81; organism=Gossypium sp.; type=genetic_marker; length=105bp
GCCGGTTCAGACTATTAGTTTGACTGATATATAAAAATAAATATGTTTAG
[C/T]AAGTTAATCCAAGGTCTTAGACCAAAAATGTTGGATAAAAATAAT
GGAAG