TAMU_GH_TBb095M24f86, TAMU_GH_TBb095M24f86 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb095M24f86
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i32458Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:66962993..66963093 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:82846848..82846948 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:76061637..76061737 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr13chromosomeDt_chr13:25872783..25872883 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:63673739..63673839 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:86649480..86649580 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:87504741..87504841 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:85121004..85121104 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:82909863..82909963 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:85156357..85156457 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:85216633..85216733 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:83002817..83002917 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:89679762..89679862 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:81463960..81464060 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:88394188..88394288 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:81355703..81355803 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch01_At.01N/A51.77SNPi32458GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch01_At.01N/A50.62i32458GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch01_At.01N/A52.1i32458GhView
Sequence
>TAMU_GH_TBb095M24f86 ID=TAMU_GH_TBb095M24f86; Name=TAMU_GH_TBb095M24f86; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATGCAAGTGAGTTTTCAAAAAGAAAACTGACATTGATGGTAACGTACAAA
[C/T]ATACAAAGGGCTATTAGTCACTAAAGGTTTTCACCAAGTTCATGG
TATAG