TAMU_GH_TBb086L11r470, TAMU_GH_TBb086L11r470 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb086L11r470
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i31634Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:2556920..2557020 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:3022023..3022123 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr5chromosomeAt_chr5:1805793..1805893 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:2042170..2042270 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:3769352..3769452 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:3354721..3354821 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:3616292..3616392 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:3066681..3066781 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:3013887..3013987 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:3114817..3114917 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:3345374..3345474 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:3651470..3651570 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:3306182..3306282 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:3676645..3676745 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:2804311..2804411 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A120.8SNPi31634GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A98.5i31634GhView
Sequence
>TAMU_GH_TBb086L11r470 ID=TAMU_GH_TBb086L11r470; Name=TAMU_GH_TBb086L11r470; organism=Gossypium sp.; type=genetic_marker; length=105bp
AGCCTTGTAAGATTTATACATTATGTCTAGGGGTATAATCGAGCTGAGCC
[C/T]GAATATTGTCAACCTTGAGTTTGATACTTAGTTTGAGCTTAATTC
AACTT