TAMU_GH_TBb083N24r285, TAMU_GH_TBb083N24r285 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb083N24r285
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i31359Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:66888390..66888390 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
A04chromosomeA04:3418003..3418103 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:3474104..3474204 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:53031644..53031744 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:93415899..93415999 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:6622463..6622563 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:4473965..4474065 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:4409195..4409295 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:3396098..3396198 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:4016106..4016206 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:3227274..3227374 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:3325553..3325653 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:3686562..3686662 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:3481583..3481683 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:3851715..3851815 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:4156067..4156167 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:3657276..3657376 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:3357697..3357797 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:90274269..90274369 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:93935916..93936016 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:54416908..54417008 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:8483889..8483989 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:54519002..54519102 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:51526922..51527022 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:58757257..58757357 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:40179171..40179271 +Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:99744555..99744655 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:72897480..72897580 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:14182414..14182514 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch04_At.04N/A23.5i31359GhView
2Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch04_At.04N/A7.7i31359GhView
Sequence
>TAMU_GH_TBb083N24r285 ID=TAMU_GH_TBb083N24r285; Name=TAMU_GH_TBb083N24r285; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTAACATTATCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTT
[C/T]CCGGTGAGGGTTTTTACAAATATCTGCATCCCACCCCGAAGACGA
AGGAC