TAMU_GH_TBb076O15f616, TAMU_GH_TBb076O15f616 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb076O15f616
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i30614Gh
TypeSNP
SNP AllelesT/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:11309929..11310029 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:10405791..10405891 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:11915251..11915351 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr2chromosomeAt_chr2:10818218..10818318 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:10153324..10153424 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:10605201..10605301 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:10095795..10095895 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:10727854..10727954 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:10547055..10547155 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:10490653..10490753 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:10098993..10099093 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:11539951..11540051 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:10798330..10798430 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:10683528..10683628 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:10739738..10739838 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10804750..10804850 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:11756343..11756443 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch01_At.01N/A23.25i30614GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch01_At.01N/A23.25i30614GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch01_At.01N/A103.64i30614GhView
Sequence
>TAMU_GH_TBb076O15f616 ID=TAMU_GH_TBb076O15f616; Name=TAMU_GH_TBb076O15f616; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTCATTAGAATTATTCATTCAATATACTCTCTCAAATCTTTGTTTTTCAT
[G/T]CTTCTTCATCAAATCAAATTTCTGCTTGTTTGTTTGCCAAGTCTC
AAGCC