TAMU_GH_TBb068H12r423, TAMU_GH_TBb068H12r423 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb068H12r423
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i29829Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr13chromosomeChr13:4472719..4472719 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D13chromosomeD13:5526603..5526703 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:4844728..4844828 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:4518197..4518296 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:4608044..4608144 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold4673.1supercontigscaffold4673.1:16900..17000 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3416_A13supercontigscaffold3416_A13:73352..73452 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D13chromosomeD13:5177992..5178092 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:4890218..4890318 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:4879855..4879955 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:5100646..5100746 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:4785524..4785624 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:4594188..4594288 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:4607523..4607623 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:4845162..4845262 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:5179743..5179843 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:4834518..4834618 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:5221321..5221421 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:4535509..4535609 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:89368213..89368313 +Gossypium anomalum (B1) genome NSF_v1n/a
chr13chromosomechr13:4384618..4384718 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:4743444..4743544 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:5129439..5129539 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:4920085..4920185 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:166809504..166809604 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch18_Dt.13N/A14.12i29829GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch18_Dt.13N/A14.12i29829GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch18_Dt.13N/A36.47i29829GhView
Sequence
>TAMU_GH_TBb068H12r423 ID=TAMU_GH_TBb068H12r423; Name=TAMU_GH_TBb068H12r423; organism=Gossypium sp.; type=genetic_marker; length=101bp
TTAAGCTCTTTAACTAGTATGATTTATTGGTGAAGCTGACTTATCACCAT
RGGTCTAAGTGTTCAGTACCAACATTCATAAACAATGAAAATAGAWTGAT
G