TAMU_GH_TBb067G05r540, TAMU_GH_TBb067G05r540 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb067G05r540
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i29717Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A04chromosomeA04:7982562..7982662 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:7632516..7632616 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:87811834..87811934 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr12chromosomeAt_chr12:44078486..44078586 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A04chromosomeA04:7447515..7447615 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:8916887..8916987 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A04chromosomeA04:7971368..7971468 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:7750118..7750218 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:7444126..7444226 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A04chromosomeGbar_A04:7940652..7940752 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A04chromosomeA04:7820534..7820634 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017613.1chromosomeCM017613.1:8526650..8526750 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017639.1chromosomeCM017639.1:9100352..9100452 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017691.1chromosomeCM017691.1:7871893..7871993 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A04chromosomeA04:8514717..8514817 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:84815397..84815497 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:88598563..88598663 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch04_At.04N/A55.55i29717GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch04_At.04N/A39.48i29717GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch04_At.04N/A34.2i29717GhView
Sequence
>TAMU_GH_TBb067G05r540 ID=TAMU_GH_TBb067G05r540; Name=TAMU_GH_TBb067G05r540; organism=Gossypium sp.; type=genetic_marker; length=105bp
CCTTAGAAGCACAAATACAGTGGAAAATCCACCAACTTAATGTGAAGTCA
[A/G]CATTTTTAAATGGACTCCTTGAAGAAGAGATTTATGTTGAGCAAC
CTCAA