TAMU_GH_TBb047B22r616, TAMU_GH_TBb047B22r616 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb047B22r616
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i27668Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:95996024..95996125 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:99417035..99417136 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:115145411..115145512 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:1727578..1727679 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:72442254..72442355 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:99153820..99153921 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:101534498..101534599 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:99639682..99639783 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:98090789..98090890 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:100364373..100364474 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:103757328..103757429 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:101345975..101346076 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:106319351..106319452 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:101278999..101279100 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:102363052..102363153 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:107773877..107773978 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:112260525..112260626 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch13_At.13N/A30.2i27668GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch13_At.13N/A30.2i27668GhView
33-79 x TM-1, F2 (2015 SNP)AD_ch13_At.13N/A106.09i27668GhView
Sequence
>TAMU_GH_TBb047B22r616 ID=TAMU_GH_TBb047B22r616; Name=TAMU_GH_TBb047B22r616; organism=Gossypium sp.; type=genetic_marker; length=105bp
CAGCAATTTCAAGTAGTTGAATTGCATTTTGTGGCTCCATTAGACACTCA
[A/G]CTTCTACTTTCTCACAAGACTCTTTAAGCTAGGTATGGTCTTCAT
CTCGG