TAMU_GH_TBb043M05r341, TAMU_GH_TBb043M05r341 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb043M05r341
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i27343Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:100561266..100561366 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:98578094..98578194 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:129383479..129383579 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:9073056..9073156 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:48508625..48508725 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold729_A03supercontigscaffold729_A03:89113..89213 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:105241159..105241259 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:104176448..104176548 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:102318107..102318207 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:97567473..97567573 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:97746839..97746939 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:100137078..100137178 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:99386573..99386673 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:106545374..106545474 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:100483220..100483320 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:105892104..105892204 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:7828953..7829053 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:7695303..7695403 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A56.89SNPi27343GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A50.21i27343GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A50.1i27343GhView
Sequence
>TAMU_GH_TBb043M05r341 ID=TAMU_GH_TBb043M05r341; Name=TAMU_GH_TBb043M05r341; organism=Gossypium sp.; type=genetic_marker; length=105bp
GTTGGTTGTTGTTCCTTAAGCTTGCCAAAGGTGTTACTGCCATTGTAGGC
[A/G]TTTGTCCTAAACTTGGATATACAAGTTGATTGTTGTTTCTTAAGC
TTGCC