TAMU_GH_TBb039H12r233, TAMU_GH_TBb039H12r233 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb039H12r233
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i26917Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr06chromosomeChr06:7775617..7775617 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D09chromosomeD09:8176188..8176288 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:7355149..7355249 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:7866949..7867049 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:37006502..37006602 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr6chromosomeDt_chr6:41037148..41037248 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:8010403..8010503 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:8437958..8438058 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:7841826..7841926 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:7925045..7925145 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:7793705..7793805 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:8514976..8515076 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:9335298..9335398 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:7516331..7516431 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:7125290..7125390 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:7719939..7720039 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:8242275..8242375 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:7857462..7857562 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_06chromosomeChr_06:6536457..6536557 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:5749391..5749489 +Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch06_At.06N/A23.61i26917GhView
20-153 x sGK9708, RIL (2017)AD_ch23_Dt.09N/A25.44i26917GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch06_At.06N/A23.61i26917GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch23_Dt.09N/A25.27i26917GhView
Sequence
>TAMU_GH_TBb039H12r233 ID=TAMU_GH_TBb039H12r233; Name=TAMU_GH_TBb039H12r233; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTATTCAACAAATGGGTAAATTAGCCACTATTTGAGCAAAATGGCTCTAC
[A/G]TTTTGATTTGGTGTTTGTATAATAATAAATTTAGCCATAAATCTT
TACAC