TAMU_GH_TBb034K15f171, TAMU_GH_TBb034K15f171 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb034K15f171
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i26474Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr03chromosomeChr03:45080110..45080110 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
A03chromosomeA03:478325..478425 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:843594..843694 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:91730723..91730823 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold3620.1supercontigscaffold3620.1:85859..85959 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:536767..536867 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:1356396..1356496 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:841729..841829 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:942724..942824 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:665139..665239 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:877097..877197 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:845331..845431 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:906327..906427 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:970773..970873 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:946332..946432 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:994987..995087 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:842886..842986 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:117949522..117949622 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch03_At.03N/A141.75SNPi26474GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch03_At.03N/A136.14i26474GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch03_At.03N/A119.3i26474GhView
Sequence
>TAMU_GH_TBb034K15f171 ID=TAMU_GH_TBb034K15f171; Name=TAMU_GH_TBb034K15f171; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTATTAACCATATAAGTTTGTTTTTATATTTAATTTGTTATACTAATTTA
[A/G]ATCTTTTTGTTAATAGGAAATGGAAACGAAGCTGTTAGAGAGACT
GCACC