TAMU_GH_TBb026N07r308, TAMU_GH_TBb026N07r308 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb026N07r308
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25620Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A02chromosomeA02:7690285..7690385 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018203.1chromosomeCM018203.1:6877834..6877931 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:7647599..7647699 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
scaffold795.1supercontigscaffold795.1:721166..721266 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A02chromosomeA02:7029483..7029583 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A02chromosomeGhir_A02:6990531..6990631 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A02chromosomeA02:6717071..6717171 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A02chromosomeA02:7245032..7245132 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A02chromosomeA02:7230498..7230598 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Gbar_A02chromosomeGbar_A02:6940423..6940520 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A02chromosomeA02:6875962..6876059 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017611.1chromosomeCM017611.1:6924724..6924824 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017637.1chromosomeCM017637.1:7265527..7265627 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017689.1chromosomeCM017689.1:7006753..7006853 +Gossypium darwinii (AD5) genome HGS_v1.1
A02chromosomeA02:7310036..7310136 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr03chromosomeChr03:124132428..124132528 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr03chromosomeChr03:122960082..122960182 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch02_At.02N/A76.14SNPi25620GhView
23-79 x TM-1, F2 (2015 SNP)AD_ch02_At.02N/A82.93i25620GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch02_At.02N/A66.2i25620GhView
Sequence
>TAMU_GH_TBb026N07r308 ID=TAMU_GH_TBb026N07r308; Name=TAMU_GH_TBb026N07r308; organism=Gossypium sp.; type=genetic_marker; length=105bp
CAATTTTTTCATTGCAAATTTTACACAACATGGGGAACTCACTATTTCTA
[A/G]TTGAAAAGAAAAAAGAGTTCTATTATATATAATGAATTGCTACTC
TGGGT