TAMU_GH_TBb021H20f340, TAMU_GH_TBb021H20f340 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb021H20f340
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i25139Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr04chromosomeChr04:56143003..56143003 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D08chromosomeD08:63071621..63071721 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:59396431..59396531 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
At_chr10chromosomeAt_chr10:76890144..76890244 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:59788449..59788549 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:62329947..62330047 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:62796840..62796940 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:62167077..62167177 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:59454901..59455001 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:59500986..59501086 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:61395154..61395254 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:61054638..61054738 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:63294462..63294562 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:59792518..59792618 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:62941727..62941827 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch24_Dt.08N/A13.36i25139GhView
20-153 x sGK9708, RIL (2017)AD_ch24_Dt.08N/A17.85i25139GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch24_Dt.08N/A13.36i25139GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch24_Dt.08N/A34.67i25139GhView
Sequence
>TAMU_GH_TBb021H20f340 ID=TAMU_GH_TBb021H20f340; Name=TAMU_GH_TBb021H20f340; organism=Gossypium sp.; type=genetic_marker; length=105bp
TTATGTTGATTGACTCAAGGACTACACACAATTTTATTGACTCTAAATTG
[A/G]CCAAAAAGTTACACTTATCAGTGGAAATAGTTGATAAGATGAAGT
TAATG