TAMU_GH_TBb015C14f86, TAMU_GH_TBb015C14f86 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb015C14f86
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i24483Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr02chromosomeChr02:30825029..30825029 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
D01chromosomeD01:29154086..29154186 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:27713639..27713739 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:26489114..26489214 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr2chromosomeDt_chr2:28830570..28830670 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:27344394..27344494 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:28595503..28595603 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:27913962..27914062 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:28133146..28133246 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:28369126..28369226 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:28326324..28326424 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:28154817..28154917 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:28229203..28229303 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:29611067..29611167 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:27792036..27792136 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:28902371..28902471 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:21723776..21723876 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:27329086..27329186 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:27265207..27265307 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:24106763..24106863 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:18057485..18057585 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:22691185..22691285 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch15_Dt.01N/A25.61i24483GhView
2Phytogen 72 x Stoneville 474, consbin (2017)AD_ch15_Dt.01N/A57.99i24483GhView
3HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch15_Dt.01N/A25.61i24483GhView
4Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch15_Dt.01N/A65.1i24483GhView
Sequence
>TAMU_GH_TBb015C14f86 ID=TAMU_GH_TBb015C14f86; Name=TAMU_GH_TBb015C14f86; organism=Gossypium sp.; type=genetic_marker; length=105bp
ATCTAGATATAATAGCACTACAAGAAGCATTCATTTTAACTTGTTCACCT
[A/G]CCTTAATTTTCCTACGACTAGACATGATTTCTTTTAAAAATTTAG
CTTAC