TAMU_GH_TBb010C12r398, TAMU_GH_TBb010C12r398 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBb010C12r398
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i23966Gh
TypeSNP
SNP AllelesT/C
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:63522974..63523043 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018214.1chromosomeCM018214.1:68423366..68423435 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:78362630..78362699 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:33135973..33136042 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:41203271..41203340 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:67431612..67431681 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:70441226..70441295 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:68327971..68328040 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:67035177..67035246 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:69428712..69428781 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:72629116..72629185 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:70265879..70265948 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:72912994..72913063 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:71067408..71067477 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:70472260..70472329 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:43911743..43911812 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:78216844..78216913 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch13_At.13N/A28.79i23966GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2018)AD_ch13_At.13N/A28.79i23966GhView
3Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch13_At.13N/A47i23966GhView
Sequence
>TAMU_GH_TBb010C12r398 ID=TAMU_GH_TBb010C12r398; Name=TAMU_GH_TBb010C12r398; organism=Gossypium sp.; type=genetic_marker; length=74bp
TTAAGATAATGGCTTGGTTATTAAAGGAACTAAAGATTCATTCAGTAATC
[C/T]CAATCTGATGAGATTAGCT