NAU_TM46325, NAU_TM46325 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM46325
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM46325
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTAACTGTGTTAATTTCTTAAAGTTCTATGAACAAACGGTGTGGTATTGCTGATAGTTGCG
3' Flanking SequenceTAATGGATGAATTCTCGTTATTAAGCGATGTTGGTTCCTTCTTTTAAGAATAGGAGTTGG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:82858948..82859068 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:95441775..95441895 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr8chromosomeAt_chr8:66562663..66562783 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:55356396..55356516 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:82636070..82636190 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:85581401..85581521 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:83556590..83556710 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:82249913..82250033 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:84053008..84053128 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:87177039..87177159 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:84573564..84573684 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:89149584..89149704 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:85185704..85185824 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:85780385..85780505 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:93715782..93715902 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch13_At.13N/A45TM46325View
2LMY28 x XLZ24, RIL (2018)AD_ch13_At.13N/A102.65TM46325View
Sequence
>NAU_TM46325 ID=NAU_TM46325; Name=NAU_TM46325; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TAACTGTGTTAATTTCTTAAAGTTCTATGAACAAACGGTGTGGTATTGCT
GATAGTTGCG[C/T]TAATGGATGAATTCTCGTTATTAAGCGATGTTGGT
TCCTTCTTTTAAGAATAGGAGTTGG