NAU_TM43578, NAU_TM43578 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM43578
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM43578
TypeSNP
SNP AllelesT/G
5' Flanking SequenceCCATCTGGTGCCTCCATGAATACCAAATTTCCGGGAACCCATGCAAGAATGCCACCACTT
3' Flanking SequenceGGGACCTGCATGCCCACACCCCCATCATCATTAGAAGCTAGCTAGCCACAAGTATTATTA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:11183848..11183968 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:12357917..12358037 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:84542327..84542447 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:10386284..10386404 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:11210436..11210556 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:11455312..11455432 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:10739492..10739612 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:11385706..11385826 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:11097789..11097909 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:11259185..11259305 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:11315764..11315884 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:11853173..11853293 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:11189458..11189578 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:11951198..11951318 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:12270880..12271000 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:12698903..12699022 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_13chromosomeB_13:83569748..83569868 +Gossypium anomalum (B1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch13_At.13N/A19TM43578View
Sequence
>NAU_TM43578 ID=NAU_TM43578; Name=NAU_TM43578; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
CCATCTGGTGCCTCCATGAATACCAAATTTCCGGGAACCCATGCAAGAAT
GCCACCACTT[G/T]GGGACCTGCATGCCCACACCCCCATCATCATTAGA
AGCTAGCTAGCCACAAGTATTATTA